Glyma20g30980 - SoyBase

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Report for Sequence Feature Glyma20g30980

Feature Type:	gene_model
Chromosome:	Gm20
Start:	39631298
stop:	39654855
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g30980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22770	AT	Annotation by Michelle Graham. TAIR10: gigantea protein (GI) \| chr1:8062398-8067447 FORWARD LENGTH=1173	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0010378	GO-bp	Annotation by Michelle Graham. GO Biological Process: temperature compensation of the circadian clock	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0048578	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_E1CI63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GIGANTEA n=1 Tax=Glycine max RepID=E1CI63_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E1CI63	UniRef	Annotation by Michelle Graham. Best UniRef hit: GIGANTEA n=1 Tax=Glycine max RepID=E1CI63_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma20g30980

Locus	Gene Symbol	Protein Name
E2	GI1A	Gigantea gene 1
	GI1	gigantea protein gene 1

Expression Patterns of Glyma20g30980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g30980

Paralog	Evidence	Comments
Glyma10g36600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g30980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g170000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g30980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g30980

Limit To All Plant Sequences

>Glyma20g30980.2   sequence type=CDS   gene model=Glyma20g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGGCTTCTTCTTTGATGGCTGCTTCCAGTGAAAGGTGGATTGACCGTCTTCAGTACTCCTCATTGTTCTGGCCTCCTCCACCGGATGGTCAACAGAGAAAGGATCAAATTGCTGCATATGTTGAGTACTTCATTCAGTTTACATCAGAACAGTTTGCTGATGATATTGCTGAGTTGATCCGTAACCGTTATCCATCCAAGGATATTCTTCTCTTTGATGATGTTTTGGCAACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACTCTAGTCTATGATAAGGCTAGTCCTCCATTTGCTTCTTTCATATCTTCAGTCTGCCCAAAAATTGAGAATGAATACTCAGAACAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACGGAAAGACAATCTGGTGAAACAGAAAGAAGCACTAGTGGCAGTCATGCCACAACTAGTGAACCTGGGAAATCTGGGCATAATTCTTTGACACAGCAAGAGAAGAAACCTATTAGGCCGTTGTCCCCCTGGATTACTGATATATTGTTGTCTTCACCAGTTGGTATTAGAAGTGACTATTTCCGATGGTGCAGTGGTGTTATGGGTAAATATGCTGCAGGAGAACTGAAGCCTCCATCAACCGCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTGAGTGTTTGTGATGATGAAGTTGCTCGCAATGAGACTACTACTTTAACAGCAGCTGCTGTCCCTGCACTTTTGCTTCCTCCTCCAACGACAGCTTTGGATGAGCATCTTGTTGCTGGATTACCAGCTCTGGAACCATATGCTCGTTTATTTCATAGATATTATGCAATTGCTACTCCAAGTGCTACACAAAGACTTCTTCTTGGACTTCTTGAAGCACCCCCATCGTGGGCTCCAGATGCACTTGATGCTGCTGTGCAGCTTGTGGAGCTTCTTCGAGCTGCTGAAGATTATGCATCTGGCATAAGGGCAAAAAATCTTCCTAGAAATTGGATGCATTTGCACTTCTTGCGTGCAATAGGGACTGCAATGTCCATGAGAGCTGGTATAGCCGCTGATGCTGCCGCTGCTCTTCTTTTTCGTATACTTTCACAGCCTGCATTACTTTTTCCTCCTCTTAGACAAGTTGATGGAGTTGAAGTTCAACATGAACCTCTGGGTGGTTATATTTCTTCCTATAAAAAGCAGATAGAAGTTCCTGCAGCTGAAGCCTCAATTGAAGCTACTGCCCAAGGCATTGCATCAATGCTTTGTGCCCATGGTCCAGAGGTTGAATGGAGAATTTGCACTATTTGGGAAGCTGCTTATGGCCTGATTCCTACAAGTTCCTCAGCTGTTGATCTTCCTGAAATTATAGTTGCAACCCCGCTACAACCACCCATACTGTCATGGAATTTGTACATACCCCTACTGAAGGTCCTGGAATATCTTCCTCGAGGAAGCCCATCGGAGGCATGTCTTATGAAAATATTTGCTGCTACAGTGGAAGCTATTCTTCAGAGGACATTTCCACCCGAGTCCACTAGAGAACAAAACAGAAAATCAAAATACCTAGCTGGCATTGGCTCTGCCTCGAAAAACCTTGCCATGGCAGAACTTCGTACTATGGTTCATTCACTCTTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGCCTACTTTTTGTTGTCTTAACTGTCTGCGTCAGTCATGAAGCTCAATTCAGTGGAAGCAAGAGACCAAGAGGTGAAGATAACTATTCAGCTGAGGATATTATTGAGGACTTACAAACATCTGAAAACCAGAAAGTATCAAAAAATAGGAAATTGAAGAAGCAAGGTCCTGTAGCAGCATTTGATTCTTATGTTCTGGCTGCTGTTTGTGCTCTTGCCTGTGAGCTTCAGTTGTTCCCTTTGATTTCATGTGGGAATAATCGTTTAGCTTCCAATAATGTGCAAGATATAGCCAAGCCTGTTAGACTAAATGGATCCTCCCATGAGTTGCAGAATGGCTTAGATTCAGCAATGCGTCATACTCACAGAATTTTAGCAATTTTAGAGGCATTATTTTCATTGAAGCCATCTTCTGTTGGCACGCCTTGGAGTTACAGCTCAAATGAGATAGTTGCAGCAGCTATGGTTGCTGCACATGTTTCTGAACTATTTAGAAGGTCAAAAACTTGCATGCATGCTCTGTCTGTTCTTATTCGTTGCAAATGGGACAATGAAATTCATTCCAGGGCGTCATCATTGTATAATCTCATAGATATTCACAGCAAAGCTGTTGCATCTATAGTGAACAAGGCAGAACCATTAGAAGCAACCTTAATTCATGTACCGATTTGGAAGGATTCCCTCGTTTGTGTTGGTGTTAAAAGGCAGAATCAGTGTGAAAGTAGTAGCTGCTTTGCCCCTGGGCAGACATCTGTTGTACCTTCAGAAGATTCATTCCCATCAAAAGTTGACCATAATTCTCAGAAAACCCCATGTTCAAAGGATGCATCAGATTATACCTTGGGTAAAGGTGTCACAGGTTTCTCATTAGATGCTTCTGATCTAGCCAACTTCCTCACAATGGACAGGCATATAGGATTGAATTGCAATGGGCAAATTTTTCTAAGATCCACGCTGGCAGAGAAACAAGAGTTATGTTTCTCTGTAGTTTCACTGTTATGGCACAAGTTGATTGCATCTCCTGAAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGGTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCTACGGCAGTTGTACTTCAGGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTGAAATTGATCGTGGAACTTATGAGGAATCATGAGACTTCAGAATCATTGGTAATTGTGGCAAGTTCTTCAGATTTACTACTGCGAGCCACAGATGGGATGCTGGTTGATGGAGAAGCTTGCACTTTACCACAGTTGGAGCTATTGGAAGCAACAGCTAGAGCAGTTCAGCCAGTGCTCGAGTTTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCCGAGCTCTGAGTATATCAGTTCTTCGTGACATTTTGCATACTGGTTCAATCAGATGTAGTCCTAAACCTCGGAGATTAAATGGCACCCACAACCCCTCTTATCAATACTTCAATTTGGATGTCATTGACTGGCAAGCTGACATAGAAAAATGCTTGACTTGGGAAGCTCACAGCCGACTTTCAAACGGATTGTCTATTAACTTTCTTGATACCGCTGCCAAAGAGTTAGGCTGTACTATTTCCATGTGA

Predicted protein sequences of Glyma20g30980

Limit To All Plant Sequences

>Glyma20g30980.2   sequence type=predicted peptide   gene model=Glyma20g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSASSLMAASSERWIDRLQYSSLFWPPPPDGQQRKDQIAAYVEYFIQFTSEQFADDIAELIRNRYPSKDILLFDDVLATFVLHHPEHGHAVVLPIISCIIDGTLVYDKASPPFASFISSVCPKIENEYSEQWALACGEILRILTHYNRPIYKTERQSGETERSTSGSHATTSEPGKSGHNSLTQQEKKPIRPLSPWITDILLSSPVGIRSDYFRWCSGVMGKYAAGELKPPSTASSRGSGKHPQLVPSTPRWAVANGAGVILSVCDDEVARNETTTLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGIRAKNLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISSYKKQIEVPAAEASIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPTSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFAATVEAILQRTFPPESTREQNRKSKYLAGIGSASKNLAMAELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAQFSGSKRPRGEDNYSAEDIIEDLQTSENQKVSKNRKLKKQGPVAAFDSYVLAAVCALACELQLFPLISCGNNRLASNNVQDIAKPVRLNGSSHELQNGLDSAMRHTHRILAILEALFSLKPSSVGTPWSYSSNEIVAAAMVAAHVSELFRRSKTCMHALSVLIRCKWDNEIHSRASSLYNLIDIHSKAVASIVNKAEPLEATLIHVPIWKDSLVCVGVKRQNQCESSSCFAPGQTSVVPSEDSFPSKVDHNSQKTPCSKDASDYTLGKGVTGFSLDASDLANFLTMDRHIGLNCNGQIFLRSTLAEKQELCFSVVSLLWHKLIASPETQPCAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDLGQKMWRINQRIVKLIVELMRNHETSESLVIVASSSDLLLRATDGMLVDGEACTLPQLELLEATARAVQPVLEFGESGLAVADGLSNLLKCRLSATIRCLSHPSAHVRALSISVLRDILHTGSIRCSPKPRRLNGTHNPSYQYFNLDVIDWQADIEKCLTWEAHSRLSNGLSINFLDTAAKELGCTISM*

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